Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Cellular Macromolecule Biosynthetic Process (GO:0034645) Genes Targeted by hsa-mir-561 in MPM Mesothelioma Gordon Cluster 48 Table contains all genes in the MPM Mesothelioma Gordon cluster number 48. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-561 GO:0034645 4232 MEST mesoderm specific transcript homolog (mouse) [Source:HGNC Symbol;Acc:7028] P T 9879 DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:HGNC Symbol;Acc:18681] zzz999 51614 ERGIC3 ERGIC and golgi 3 [Source:HGNC Symbol;Acc:15927] zzz999 55830 GLT8D1 glycosyltransferase 8 domain containing 1 [Source:HGNC Symbol;Acc:24870] zzz999 10069 RWDD2B RWD domain containing 2B [Source:HGNC Symbol;Acc:1302] T 8890 EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa [Source:HGNC Symbol;Acc:3260] zzz999 Yes 55917 CTTNBP2NL CTTNBP2 N-terminal like [Source:HGNC Symbol;Acc:25330] T 51506 UFC1 ubiquitin-fold modifier conjugating enzyme 1 [Source:HGNC Symbol;Acc:26941] zzz999 2108 ETFA electron-transfer-flavoprotein, alpha polypeptide [Source:HGNC Symbol;Acc:3481] T 4691 NCL nucleolin [Source:HGNC Symbol;Acc:7667] P T 5885 RAD21 RAD21 homolog (S. pombe) [Source:HGNC Symbol;Acc:9811] P T Yes 54816 ZNF280D zinc finger protein 280D [Source:HGNC Symbol;Acc:25953] P Yes 8409 UXT ubiquitously-expressed transcript [Source:HGNC Symbol;Acc:12641] zzz999 10575 CCT4 chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617] zzz999 11083 DIDO1 death inducer-obliterator 1 [Source:HGNC Symbol;Acc:2680] P Yes 9015 TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa [Source:HGNC Symbol;Acc:11532] zzz999 Yes 57343 ZNF304 zinc finger protein 304 [Source:HGNC Symbol;Acc:13505] zzz999 Yes 220988 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] P T 6919 TCEA2 transcription elongation factor A (SII), 2 [Source:HGNC Symbol;Acc:11614] zzz999 Yes 1938 EEF2 eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:3214] zzz999 Yes 3608 ILF2 interleukin enhancer binding factor 2, 45kDa [Source:HGNC Symbol;Acc:6037] zzz999 Yes 7188 TRAF5 TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035] zzz999 Yes 55661 DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:HGNC Symbol;Acc:15837] zzz999 9994 zzz999 zzz999 T Yes 661 POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa [Source:HGNC Symbol;Acc:1080] zzz999 Yes 55213 RCBTB1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 [Source:HGNC Symbol;Acc:18243] T Yes 6635 SNRPE small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] T Yes 3399 ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein [Source:HGNC Symbol;Acc:5362] P T Yes 55326 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) [Source:HGNC Symbol;Acc:20886] T 3066 HDAC2 histone deacetylase 2 [Source:HGNC Symbol;Acc:4853] T Yes 9584 RBM39 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923] zzz999 Yes 9070 ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) [Source:HGNC Symbol;Acc:744] zzz999 Yes 10765 KDM5B lysine (K)-specific demethylase 5B [Source:HGNC Symbol;Acc:18039] zzz999 Yes 1203 CLN5 ceroid-lipofuscinosis, neuronal 5 [Source:HGNC Symbol;Acc:2076] T 6209 RPS15 ribosomal protein S15 [Source:HGNC Symbol;Acc:10388] zzz999 Yes 11311 VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14579] zzz999 8440 NCK2 NCK adaptor protein 2 [Source:HGNC Symbol;Acc:7665] zzz999 Yes 157869 C8orf84 chromosome 8 open reading frame 84 [Source:HGNC Symbol;Acc:30362] zzz999 23186 RCOR1 REST corepressor 1 [Source:HGNC Symbol;Acc:17441] T Yes 4704 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa [Source:HGNC Symbol;Acc:7693] zzz999 22982 DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150] P T 23483 TGDS TDP-glucose 4,6-dehydratase [Source:HGNC Symbol;Acc:20324] zzz999 7247 TSN translin [Source:HGNC Symbol;Acc:12379] zzz999 7673 ZNF222 zinc finger protein 222 [Source:HGNC Symbol;Acc:13015] zzz999 Yes 56603 CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:20581] zzz999 27018 NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 [Source:HGNC Symbol;Acc:13388] zzz999 6188 RPS3 ribosomal protein S3 [Source:HGNC Symbol;Acc:10420] zzz999 Yes 1911 PHC1 polyhomeotic homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:3182] zzz999 81618 ITM2C integral membrane protein 2C [Source:HGNC Symbol;Acc:6175] zzz999 55775 TDP1 tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:18884] T 10549 PRDX4 peroxiredoxin 4 [Source:HGNC Symbol;Acc:17169] zzz999 7203 CCT3 chaperonin containing TCP1, subunit 3 (gamma) [Source:HGNC Symbol;Acc:1616] zzz999 2739 GLO1 glyoxalase I [Source:HGNC Symbol;Acc:4323] T 5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:HGNC Symbol;Acc:3356] zzz999 Yes 23360 FNBP4 formin binding protein 4 [Source:HGNC Symbol;Acc:19752] T 55205 ZNF532 zinc finger protein 532 [Source:HGNC Symbol;Acc:30940] zzz999 Yes 57820 CCNB1IP1 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:19437] zzz999 6193 RPS5 ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] zzz999 Yes 23299 BICD2 bicaudal D homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17208] P T 3964 LGALS8 lectin, galactoside-binding, soluble, 8 [Source:HGNC Symbol;Acc:6569] zzz999 8666 EIF3G eukaryotic translation initiation factor 3, subunit G [Source:HGNC Symbol;Acc:3274] zzz999 Yes 51501 C11orf73 chromosome 11 open reading frame 73 [Source:HGNC Symbol;Acc:26938] zzz999 90806 ANGEL2 angel homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:30534] T 6132 RPL8 ribosomal protein L8 [Source:HGNC Symbol;Acc:10368] zzz999 Yes 6136 RPL12 ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] zzz999 Yes 55578 FAM48A family with sequence similarity 48, member A [Source:HGNC Symbol;Acc:20596] T 26574 AATF apoptosis antagonizing transcription factor [Source:HGNC Symbol;Acc:19235] zzz999 Yes 7520 XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) [Source:HGNC Symbol;Acc:12833] zzz999 Yes 5859 QARS glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751] zzz999 Yes 5757 PTMA prothymosin, alpha [Source:HGNC Symbol;Acc:9623] zzz999 Yes 10732 TCFL5 transcription factor-like 5 (basic helix-loop-helix) [Source:HGNC Symbol;Acc:11646] zzz999 Yes 7072 TIA1 TIA1 cytotoxic granule-associated RNA binding protein [Source:HGNC Symbol;Acc:11802] P T Yes 58516 FAM60A family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702] P T 10808 HSPH1 heat shock 105kDa/110kDa protein 1 [Source:HGNC Symbol;Acc:16969] T 81611 ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:HGNC Symbol;Acc:16673] P T 642 BLMH bleomycin hydrolase [Source:HGNC Symbol;Acc:1059] P T 6821 SUOX sulfite oxidase [Source:HGNC Symbol;Acc:11460] zzz999 9056 SLC7A7 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 [Source:HGNC Symbol;Acc:11065] zzz999 8575 PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator [Source:HGNC Symbol;Acc:9438] P T 25936 NSL1 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24548] T 9500 MAGED1 melanoma antigen family D, 1 [Source:HGNC Symbol;Acc:6813] zzz999 Yes 27316 RBMX RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] T 5793 PTPRG protein tyrosine phosphatase, receptor type, G [Source:HGNC Symbol;Acc:9671] zzz999 8491 MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 [Source:HGNC Symbol;Acc:6865] zzz999 55030 FBXO34 F-box protein 34 [Source:HGNC Symbol;Acc:20201] zzz999 58517 RBM25 RNA binding motif protein 25 [Source:HGNC Symbol;Acc:23244] zzz999 65003 MRPL11 mitochondrial ribosomal protein L11 [Source:HGNC Symbol;Acc:14042] zzz999 Yes 4673 NAP1L1 nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] zzz999 Yes 1112 FOXN3 forkhead box N3 [Source:HGNC Symbol;Acc:1928] P T Yes 9823 ARMCX2 armadillo repeat containing, X-linked 2 [Source:HGNC Symbol;Acc:16869] zzz999 7138 TNNT1 troponin T type 1 (skeletal, slow) [Source:HGNC Symbol;Acc:11948] zzz999 51637 C14orf166 chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] zzz999 25813 SAMM50 sorting and assembly machinery component 50 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24276] zzz999 6596 HLTF helicase-like transcription factor [Source:HGNC Symbol;Acc:11099] T Yes 29107 NXT1 NTF2-like export factor 1 [Source:HGNC Symbol;Acc:15913] T 10484 SEC23A Sec23 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10701] zzz999 Yes 55818 KDM3A lysine (K)-specific demethylase 3A [Source:HGNC Symbol;Acc:20815] zzz999 Yes 3183 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:5035] P T 518 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] P T 4092 SMAD7 SMAD family member 7 [Source:HGNC Symbol;Acc:6773] zzz999 Yes 1499 CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa [Source:HGNC Symbol;Acc:2514] P T Yes 6142 RPL18A ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] zzz999 Yes

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